I have today installed the Cytomine version 3 from cytomine.org Here I will explain in detail the different steps needed to install the software. Firstly I installed a Linux Ubuntu 18.04LTS with 16VCPU’s and 64GB memory in the Norwegian UH OpenStack nrec.no cloud. Then I installed the Docker-CE with following bash commands: The docker service…
If you have Windows 10 and miss sometimes to have a linux distro locally, you can install the Windows Subsystem for Linux. First start a CMD shell (start-run, type: CMD) Then: powershell Then you type: Enable-WindowsOptionalFeature -Online -FeatureName Microsoft-Windows-Subsystem-Linux Restart the computer. Then go to Microsoft Store and choose your option. I chose Ubuntu 18.04…
If you have a lot of files (several TB) on a Linux server, and you want to synchronize them daily to a local USB disc, you can use Cygwin rsync for the job. First you need to install Cygwin on your Windows computer: https://www.cygwin.com/ Then start up a CMD on your windows computer, and type: rsync…
We have a collaborating project between Norway, Moldova, Armenia and Belarus in Oral Pathology. In order to view slides online we installed a software called Cytomine. This software, or multiple combined software/applications, is developed in Belgium by a cooperating team. All about Cytomine can be read here: https://cytomine.coop/ This is an open source software. It is…
On Redhat 5 and 6 we could empty the ldap cache with this command: nscd -i group and nscd -i netgroup But in Redhat 7 this doesn’t work. Instead one have to run this command: sss_cache -E here is more about sss_cache from Redhat: https://access.redhat.com/documentation/en-us/red_hat_enterprise_linux/6/html/deployment_guide/sssd-cache
Sometime yum update just breaks everything. We experienced this, and had to go backup to previous versions. In RHEL6 and RHEL7 you can run this command: yum history list all which will give you a list of transactions ID’s. Now you just need to figure out how far you want to go back in the…
I have managed to create my first server in an openstack enviroment here at university of Bergen. I can see my instance in the Dashboard: Next thing was to add a volume: Project -> Compute -> Volumes: Create Volume After creating it, I had to go to “Manage Attachments”, and in Manage Volumen Attachments, I…